Hands-on ATTRACT Tutorial, april-may 2020
This is a tutorial for the 3D modeling of nucleic acid – protein complexes, using the ATTRACT docking software.
The test-case examples are RNA-protein complexes, but the same can be applied for DNA-protein docking or protein-protein docking
Three exercises are proposed:
- Rigid docking
- Flexible docking
- Fragment-based docking (for ssRNA)
Each exercise requires ~30 min.
You will need a linux machine and to install ATTRACT from https://github.com/sjdv1982/attract (see INSTALLATION.txt)
You will find the instruction for the tutorial here, and the inputs and scripts here.
For technical or scientific questions, please contact : isaure.chauvot-de-beauchene@loria.fr
Winter School AlgoSB, 14-18 january 2019
The MBI platform was used successfully during a hands-on tutorial presented by Isaure Chauvot de Beauchene about RNA-protein docking, at the Winter School AlgoSB, 14-18 january 2019, in Marseille.
